Deputy vs Wave Payroll
A head-to-head comparison to help you pick the right tool
Last updated: April 30, 2026
Deputy
Deputy is a workforce management platform focused on employee scheduling, time tracking, and labor compliance. It helps businesses with shift-based workforces build schedules, manage leave, and track hours worked. Deputy integrates with major payroll providers to streamline the pay run process.
Wave Payroll
Wave Payroll is a simple payroll solution built into the Wave accounting ecosystem. It is designed for very small businesses that already use Wave for accounting and want an integrated payroll solution. Wave Payroll handles direct deposit, tax payments, and W-2s, making it a natural choice for businesses already in the Wave ecosystem.
Pros
- ✓Excellent scheduling tools with AI-powered shift recommendations
- ✓Strong labor compliance features for overtime and break rules
- ✓Good mobile app for employees to clock in, swap shifts, and request leave
- ✓Integrates with 30+ payroll providers
Cons
- ✗Limited core HR features beyond scheduling and time tracking
- ✗Not a full HRIS replacement
- ✗Reporting could be more customizable for complex workforce analytics
Pros
- ✓Seamlessly integrates with Wave accounting — no manual data transfer needed
- ✓Very affordable pricing for micro-businesses
- ✓Simple interface with minimal setup required
- ✓Free Wave accounting included with subscription
Cons
- ✗Limited features compared to dedicated payroll platforms
- ✗Tax filing is only automatic in select states — manual filing required in others
- ✗No mobile payroll app
- ✗Not suitable for businesses with complex payroll needs
Deputy vs Wave Payroll: Side by Side
| Factor | Deputy | Wave Payroll |
|---|---|---|
| User Rating | N/A | N/A |
| Category | HR Software | Payroll Software |
| Pricing Model | Paid | Paid |
| Starting Price | $4.50/user/mo | $20/mo + $6/person |
| Best For | Businesses with hourly workers needing scheduling and time tracking | Micro-businesses already using Wave accounting that want simple integrated payroll |
| Our Pick | — | — |
Deputy Features
- ✓Employee scheduling
- ✓time tracking
- ✓leave management
- ✓payroll integrations
- ✓reporting
Wave Payroll Features
- ✓Payroll processing
- ✓direct deposit
- ✓tax payments and filings
- ✓W-2 and 1099 preparation
- ✓Wave accounting integration
- ✓employee self-service
Pricing Comparison
Our Take
Choose Deputy if businesses with hourly workers needing scheduling and time tracking. Choose Wave Payroll if micro-businesses already using wave accounting that want simple integrated payroll.
Best For
Businesses with hourly workers needing scheduling and time tracking
Best For
Micro-businesses already using Wave accounting that want simple integrated payroll
Also Consider
If neither Deputy nor Wave Payroll is the right fit, Justworks is worth evaluating.
Justworks
Small businesses wanting Fortune 500 benefits
From $59/employee/mo
Frequently Asked Questions
What is the difference between Deputy and Wave Payroll?
Deputy is best for businesses with hourly workers needing scheduling and time tracking. Wave Payroll is best for micro-businesses already using wave accounting that want simple integrated payroll.
Which is better, Deputy or Wave Payroll?
Choose Deputy if businesses with hourly workers needing scheduling and time tracking. Choose Wave Payroll if micro-businesses already using wave accounting that want simple integrated payroll.
How much does Deputy cost?
Deputy starts at $4.50/user/mo. Pricing model: Paid.
How much does Wave Payroll cost?
Wave Payroll starts at $20/mo + $6/person. Pricing model: Paid.
Who should use Deputy?
Businesses with hourly workers needing scheduling and time tracking
Who should use Wave Payroll?
Micro-businesses already using Wave accounting that want simple integrated payroll