OnPay vs QuickBooks Payroll
A head-to-head comparison to help you pick the right tool
Last updated: April 30, 2026
OnPay
OnPay is a full-service payroll and HR platform designed for small and mid-size businesses. It offers unlimited payroll runs, automatic tax filing, and built-in HR tools at an affordable flat rate. OnPay is consistently rated as one of the best value payroll solutions for small businesses and supports a wide range of industries including restaurants, farms, and nonprofits.
QuickBooks Payroll
QuickBooks Payroll is a full-service payroll solution deeply integrated with QuickBooks accounting. It automates tax calculations, filings, and direct deposits while syncing payroll data directly with your books.
Pros
- ✓Excellent value — flat monthly pricing with no per-run fees
- ✓Supports multiple pay schedules and unlimited payroll runs
- ✓Strong industry-specific features for restaurants, farms, and nonprofits
- ✓US-based customer support included on all plans
Cons
- ✗US-only — no international payroll support
- ✗Mobile app is less polished than competitors
- ✗Limited advanced HR features compared to full HRIS platforms
Pros
- ✓Seamless QuickBooks accounting integration
- ✓Automatic tax filing and payments
- ✓Easy to use for existing QuickBooks users
- ✓Good benefits administration
- ✓Same-day direct deposit available
Cons
- ✗Best value only for QuickBooks accounting users
- ✗Can be expensive standalone
- ✗Limited HR features on lower tiers
- ✗Customer support quality varies
OnPay vs QuickBooks Payroll: Side by Side
| Factor | OnPay | QuickBooks Payroll |
|---|---|---|
| User Rating | N/A | N/A |
| Category | Payroll Software | Payroll Software |
| Pricing Model | Paid | Paid |
| Starting Price | $40/mo + $6/person | Contact for pricing |
| Best For | Small businesses wanting affordable, full-service payroll with no hidden fees | Small businesses already using QuickBooks accounting wanting seamless payroll and bookkeeping integration |
| Our Pick | — | — |
OnPay Features
- ✓Unlimited payroll runs
- ✓automatic tax filing
- ✓direct deposit
- ✓employee self-service
- ✓HR tools
- ✓benefits administration
- ✓PTO management
- ✓integrations
QuickBooks Payroll Features
- ✓Payroll processing
- ✓tax filing
- ✓direct deposit
- ✓employee self-service
- ✓time tracking
- ✓reporting
Pricing Comparison
Our Take
Choose OnPay if small businesses wanting affordable, full-service payroll with no hidden fees. Choose QuickBooks Payroll if small businesses already using quickbooks accounting wanting seamless payroll and bookkeeping integration.
Best For
Small businesses wanting affordable, full-service payroll with no hidden fees
Best For
Small businesses already using QuickBooks accounting wanting seamless payroll and bookkeeping integration
How OnPay and QuickBooks Payroll Are Similar
- •Both are Payroll Software platforms designed for business teams
- •Both offer web-based access with no software installation required
- •Both provide customer support and onboarding resources
- •Both integrate with popular third-party business tools
- •Both offer a trial or demo to evaluate before purchasing
Also Consider
If neither OnPay nor QuickBooks Payroll is the right fit, Multiplier is worth evaluating.
Multiplier
Startups and SMBs hiring internationally on a budget
From $40/contractor/mo
Frequently Asked Questions
What is the difference between OnPay and QuickBooks Payroll?
OnPay is best for small businesses wanting affordable, full-service payroll with no hidden fees. QuickBooks Payroll is best for small businesses already using quickbooks accounting wanting seamless payroll and bookkeeping integration.
Which is better, OnPay or QuickBooks Payroll?
Choose OnPay if small businesses wanting affordable, full-service payroll with no hidden fees. Choose QuickBooks Payroll if small businesses already using quickbooks accounting wanting seamless payroll and bookkeeping integration.
How much does OnPay cost?
OnPay starts at $40/mo + $6/person. Pricing model: Paid.
How much does QuickBooks Payroll cost?
Visit QuickBooks Payroll website for current pricing.
Who should use OnPay?
Small businesses wanting affordable, full-service payroll with no hidden fees
Who should use QuickBooks Payroll?
Small businesses already using QuickBooks accounting wanting seamless payroll and bookkeeping integration